PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001761.1_g00006.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 332aa    MW: 36592.4 Da    PI: 6.4298
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001761.1_g00006.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.71.1e-144392255
                             HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                             r +h+  E+rRR++iN++f+ Lr+l+P+     ++K + a+ L ++++Y++ Lq
  Itr_sc001761.1_g00006.1 43 RSKHSVTEQRRRSKINERFQILRDLIPNT----DQKRDTASFLLEVIQYVQFLQ 92
                             899*************************8....8*******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.108.0E-2339113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.9E-1939113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.2474191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.94E-144396No hitNo description
PfamPF000104.8E-124392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.7E-124797IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MKTVKSHEEE EEEEELGSRK DATNSNSNTS RDGKNSDKAN AIRSKHSVTE QRRRSKINER  60
FQILRDLIPN TDQKRDTASF LLEVIQYVQF LQEKVQKYEG SYQAWSSEPT KLMPWRNSHW  120
RMQSFVGSPQ IVKNGTGPGP TYAGRLDENP VTVPSAMQPI QQNPVESHPI SDSAFNAVDP  180
HNELATKAVT TPMTLQASLP AAVQNEGSYS HTTPRPASDA QSNECPNRIE ALSHHEESTI  240
EGGTISISSV YSQGLLNSLA QALQSTGVDL SQATISVQIN LGKRADRGLN SSVMVARDTN  300
EKPAPSVCPA VGHFRDTSTD DGLDQAQKRL RI
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009594832.11e-155PREDICTED: transcription factor BIM2
RefseqXP_016461736.11e-155PREDICTED: transcription factor BIM2-like
SwissprotQ9CAA41e-96BIM2_ARATH; Transcription factor BIM2
TrEMBLA0A068TYQ01e-144A0A068TYQ0_COFCA; Uncharacterized protein
STRINGPGSC0003DMT4000048321e-144(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44262337
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.12e-84BES1-interacting Myc-like protein 2